PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088191
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-X1
Protein Properties Length: 1101aa    MW: 118923 Da    PI: 8.0105
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.64.8e-07375392118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C+++CH+GpC++C
  Achn088191 375 CGNHVCNEICHPGPCGEC 392
                 ****************** PP

2zf-NF-X118.64e-06529547119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++lCH G CppC 
  Achn088191 529 CGQHSCESLCHSGHCPPCL 547
                 ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.89E-6135203No hitNo description
PROSITE profilePS500168.769141202IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590144199IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.317144200IPR001841Zinc finger, RING-type
CDDcd060081.86E-4233294No hitNo description
SMARTSM004380.05256274IPR000967Zinc finger, NF-X1-type
PfamPF014223.6258273IPR000967Zinc finger, NF-X1-type
CDDcd060082.15E-10301349No hitNo description
SMARTSM004380.0087311330IPR000967Zinc finger, NF-X1-type
PfamPF014220.044313328IPR000967Zinc finger, NF-X1-type
CDDcd060083.48E-9365408No hitNo description
SMARTSM004385.1E-5375394IPR000967Zinc finger, NF-X1-type
PfamPF014223.9E-4375392IPR000967Zinc finger, NF-X1-type
CDDcd060081.41E-13423471No hitNo description
SMARTSM004380.0029433452IPR000967Zinc finger, NF-X1-type
PfamPF014220.018433451IPR000967Zinc finger, NF-X1-type
SMARTSM0043864491521IPR000967Zinc finger, NF-X1-type
PfamPF014229.1491502IPR000967Zinc finger, NF-X1-type
CDDcd060084.93E-8519559No hitNo description
SMARTSM004382.0E-4529548IPR000967Zinc finger, NF-X1-type
PfamPF014229.8E-5529546IPR000967Zinc finger, NF-X1-type
CDDcd060082.53E-6576624No hitNo description
SMARTSM004380.058586604IPR000967Zinc finger, NF-X1-type
PfamPF014228.1586603IPR000967Zinc finger, NF-X1-type
SMARTSM004380.22639659IPR000967Zinc finger, NF-X1-type
PfamPF014220.059639657IPR000967Zinc finger, NF-X1-type
PfamPF0142212671697IPR000967Zinc finger, NF-X1-type
SMARTSM004381.1678699IPR000967Zinc finger, NF-X1-type
PfamPF014248.1E-5787852IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.6E-4900943IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MSSQFRNDRT DNNNRSRFAQ SGRREWVPRG SADNTSASST GTVANPPSSF NLNPKGYVTR  60
GSTSNTSASS TGTVANAPSS FNLNPNGYGG ERGNTGARRH IGRPSNQQRE RGRGNQEEKG  120
SKDLGLPQLV QEIQEKITKG TVECMICYDM VRRSAPIWSC SSCYAIFHLN CIKKWARAPT  180
SVDSLAEKNQ GFNWRCPGCQ SVQLTALKEI RYLCFCGKRQ EPPPDLYLTP HSCGEPCGKP  240
LEKEVPDGTM SKEDLCPHAC VLQCHPGPCP PCKAFAPPRL CPCRKKIITT RCSDRKSVLT  300
CGQRCEKLLE CWRHRCERVC HLGHCDPCQV MINASCFCKK KTEVVLCGEM AVKGEVKAED  360
GVFSCNSVCR KTLGCGNHVC NEICHPGPCG ECDLLPGRIK TCHCGKTSLQ EERQSCLDPI  420
PTCSQICGKS LPCGVHHCRE NCHAGNCAPC TVLVTQRCRC GSTSRTVECY KTTMDEDKFT  480
CDKPCGQKKN CGRHRCSEKC CPLSSSSNSL SGDWDPHLCS IPCGKKLRCG QHSCESLCHS  540
GHCPPCLETI FTDLTCACGG TSIPPPQPCG TPPPSCQYPC SVPQPCGHSS THSCHFGDCP  600
PCPVPIAKEC TGGHVVLRNI PCGSRDIRCN KLCGKTRQCG MHACARTCHP PPCDSSCGTS  660
SGLKASCGQT CGAPRRDCRH TCTALCHPSS PCPDGRCISG GLKGDTVFEA SVIQKLPVPL  720
QPVDANGKKI PIGQRKLTCD DECAKTERKR VLADAFGINT PNLDAIHFSE NSVMSEALSE  780
LLRRDPKWVL SVEERCKFLV LGRGRGGSSA LRVHVFCPML KEKRDAVRLI AERWKLTVNA  840
AGWEPKRFVV VHVTPKSKAP SRVLGAKGSA AVNMLQPPTF DPLTDMDPRL VVALFDLPRE  900
ADVSALVLRF GGECELVWLN DKNALAVFSD PARAATAMRR LDQGSVYYGA VVVPQNGSAS  960
VAASGANSLG GAGLAKDGAA SVSMKGNPWM KAVMQEQNWR DSSWGSEEWL AESANTEPSV  1020
WKGNDVPFAT SANRWSVLDS ATTQISSDAS AGIEDRAKSS GTQMVSDFEA EASGSNLGGQ  1080
KESNTEEASD VVDDWEQAYD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663894.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1